Package index • scFlex

Inspection

Inspect single-cell objects before conversion.

inspect_sc(): Inspect a single-cell object

General conversion

Convert between supported single-cell object formats through a common interface.

convert_sc(): Convert between supported single-cell formats

Seurat

Conversion between Seurat, AnnData, and SingleCellExperiment, including Seurat assay-version utilities.

convert_seurat_to_anndata(): Convert Seurat to AnnData
convert_anndata_to_seurat(): Convert AnnData to Seurat
convert_seurat_to_sce(): Convert Seurat to SingleCellExperiment
convert_sce_to_seurat(): Convert SingleCellExperiment to Seurat
convert_seu_v5_to_classic(): Convert a Seurat Assay5 assay to a classic Assay
convert_seu_classic_to_v5(): Convert a classic Seurat Assay to Assay5

SingleCellExperiment

Conversion between SingleCellExperiment and AnnData.

convert_sce_to_anndata(): Convert SingleCellExperiment to AnnData
convert_anndata_to_sce(): Convert AnnData to SingleCellExperiment

Loom

Conversion between Loom and other supported formats.

convert_loom_to_anndata(): Convert Loom to AnnData
convert_anndata_to_loom(): Convert AnnData to Loom
convert_loom_to_seurat(): Convert Loom to Seurat
convert_seurat_to_loom(): Convert Seurat to Loom
convert_loom_to_sce(): Convert Loom to SingleCellExperiment
convert_sce_to_loom(): Convert SingleCellExperiment to Loom

Package

scFlex scFlex-package: scFlex: Preservation-Aware Single-Cell Interoperability