Reads a SingleCellExperiment RDS object and writes a Loom file using loompy, preserving supported assays, attributes, and reductions where representable.
Usage
convert_sce_to_loom(input, output)
Arguments
- input
Path to an input SingleCellExperiment .rds file.
- output
Path to the output .loom file.
Value
The output path, returned invisibly.
Details
Loom is a more limited interchange format than Seurat, SingleCellExperiment, or AnnData, so only components representable by the current mapping are preserved.