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Convert Seurat to Loom

Source: R/convert_loom.R
convert_seurat_to_loom.Rd

Reads a Seurat RDS object and writes a Loom file using loompy, preserving supported expression matrices, attributes, and reductions where representable.

Usage

convert_seurat_to_loom(input, output)

Arguments

input

Path to an input Seurat .rds file.

output

Path to the output .loom file.

Value

The output path, returned invisibly.

Details

Loom is a more limited interchange format than Seurat, SingleCellExperiment, or AnnData, so only components representable by the current mapping are preserved.