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Convert Loom to AnnData

Source: R/convert_loom.R
convert_loom_to_anndata.Rd

Reads a Loom file through AnnData and writes the resulting object as H5AD while preserving components supported by the Loom-to-AnnData reader.

Usage

convert_loom_to_anndata(input, output)

Arguments

input

Path to an input .loom file.

output

Path to the output .h5ad file.

Value

The output path, returned invisibly.

Details

Loom is a more limited interchange format than Seurat, SingleCellExperiment, or AnnData, so only components representable by the current mapping are preserved.